bioRxiv preprint: Model-based identification of conditionally-essential genes from transposon-insertion sequencing data

Posted on July 16, 2021 by Patrick Flaherty

Vishal Sarsani’s new paper describes a model-based method for identifying conditionally essential genes. There is an R package associated with the method. This work is with our wonderful collaborators in the Chien Lab at UMass. Thanks to NIH 5R01GM135931 for funding this work.

Paper: Doubly Non-Central Beta Matrix Factorization for DNA Methylation Data accepted to UAI2021

Posted on May 13, 2021 by Patrick Flaherty

Our paper with Aaron Schein and Hanna Wallach is accepted in UAI2021. You can find a preliminary version of the paper here. Thanks to NSF 1934846 for funding this work.

Paper: Exact and Approximate Hierarchical Clustering Using A* accepted to UAI2021

Posted on May 13, 2021 by Patrick Flaherty

Our paper with Sebastian Macaluso, Craig Greenberg, Nick Monath, Kyle Cranmer, and Andrew McCallum is accepted in UAI2021. You can find a preliminary version of the paper here. Thanks to NSF 1934846 for funding this work.

Talk: Identification of Conditionally-Essential Genes at GLBIO2021

Posted on April 25, 2021 by Patrick Flaherty

Vishal Sarsani is giving a talk on his recent work at the Great Lakes Bioinformatics Conference in the special session “Genotype to Phenotype in Model and Non-Model Organisms” at 10:25am eastern time on May 13, 2021. Register here and join us!

Talk: Inferring Subclonal Populations from Structured DNA Sequencing Data at GLBIO2021

Posted on April 25, 2021 by Patrick Flaherty

Shai He is giving a talk on his recent paper at the Great Lakes Bioinformatics Conference at 11am eastern time on May 11, 2021. Register here and join us!