How to setup multinuclear NMR experiments (29Si, 11B, etc)

First, you will need to create a standard file.  Create an empty file by typing edc.  Then type rpar, which brings up a big window.  Look for the nuclei of interest, eg., P31, Si29, B11, etc., and click on the choice, then click OK.  Then you must type getprosol to complete the standard file setup.

Once you have the standard file, the rest is similar to running a 1H or 13C experiment.  On 400, you will need to run atma.

Some nuclei have several options in the rpar window.  For example, P31CPD is P31 with proton decoupling, while P31 is without the decoupling.  You can run both and compare the spectra and look for the difference.

F19 only works on DPX300 (B622 Conte).  You can only select F19 (not F19CPD) in rpar window.  31P and 13C work on both DPX300 and Avance400 (LGRT room 075).  All other nuclei can only be done on Avance400.

DEPT 135 Solvent Peak

On a DEPT-135 Spectrum, any carbons that are not bonded to protons will not have peaks.  Since solvent carbons are bonded to deuterium – not protons – those carbons will not have peaks either.

The protonated impurity in the solvent will have a small carbon peak on the DEPT135 spectra, but as a singlet rather than a multiplet.  And that peak will have a slightly different chemical shift than its deuterated counterpart due to isotope effect.

Link to a number of teaching materials for new NMR users

NMR spectroscopy is a well-established scientific discipline.  Many scholars in the field have developed teaching materials that help new users get familiarized with the basics of NMR.  This NMR Wiki site collects links to many of these materials.  They all teach the same science but with their unique approach, emphasis, and target audience.  Pick an author that fits your taste, background, and needs.

Isotope effect of chemical shifts

The 13C chemical shifts of CDCl3 and CHCl3 are different.  This is called the isotope effect, arising from the difference in mass for 1H and 2H.  So when you reference your spectrum using solvent 13C signals, be sure to use the chemical shift value of the deuterated version of the molecule.

This link gives a good overview of this effect.

When sample spinning helps and when not

Sample spinning helps to remove X and Y shimming imperfections.  This will improve resolution for routine 1D 1H and 13C spectra.  For any other advanced experiments, spinning is not recommended as it might introduce artifacts into your spectra.

When running routine 1H or 13C spectra, if the sample does not spin, you might want to touch up X and Y shims in addition to Z and Z2.  Please note that topshim for 400 only corrects Z – Z4 shims.  So, after topshim, if the lock still seems noisy, touch up X and Y.  Higher order transverse shims (XZ, YZ, XY etc) usually do not markedly affect resolution.

Tips for 13C Users

Concentration

13C signal strength is only 1/6000 of 1H. For 1H experiments, any reasonable concentration will give you sufficient signal, but for 13C, usually the higher the concentration, the better. Our 400MHz and 500MHz instruments are equipped with Prodigy® cryoprobes which boost 13C signal-to-noise ratio significantly.

Signal strength is proportional to the molar concentration of your sample. Generally, if you have ~ 10 mM, you should be able to obtain a decent 13C spectrum within half an hour.

How to run 13C faster and obtain quantitative result

See these entries:

How to run quantitative 13C and 29Si NMR faster

Power of Cr(acac)3 – a T1 relaxation agent

 

Some Useful Commands

  • go:  Similar to zg, except that the new data will not overwrite the existing data, but add on to the existing data.  This is helpful when you have finished a run but feel your existing data does not have sufficient signal-to-noise ratio and you wish to add more scans.
  • lb: line broadening parameter.  its unit is Hz.  Change lb, then do efp, and you will vary the resolution and signal-to-noise ratio of the spectrum.  The default lb is 0.3-1 Hz.  Larger lb suppresses noise but broadens the peaks.  Properly tuning lb value is very helpful when your sample peaks are naturally broad.
  • tr: transfer the data acquired so far to your file, so that you can examine the preliminary spectrum when the acquisition is still running in the background.  This is helpful when you setup a long experiment.  Do tr after 20-30 scans, and look at the data.  If you see nothing (not even the solvent peak), something is wrong.  You want to find the problem early on so that you don’t waste a whole night’s time.

Variations of 13C experiments

DEPT gives you stronger signal than regular 13C, but will not show signals from non-protonated carbons.

Although HMQC is a 2D experiment, it is at least as quick as regular 13C (likely quicker). It also tells you which carbon is bonded to which proton.

HSQC is very similar to HMQC but has higher resolution and CH2 show up as negative peaks (like that in DEPT135), which further helps your signal assignment.

How to set up 2D NMR experiments

Many advanced NMR (both 1D and 2D) techniques are as easy to run as a regular 1H or 13C on our spectrometers.  Interestingly, some of them are even faster than the regular 13C.  This entry describes an easy-to-follow instruction on how to set up those experiments.

The following document is a more complete description of how to set up and process 2D NMR experiments.  Beginners should skip the discussions on how to change various experimental parameters.  The default parameter settings are very easy to setup and should already take you a long way.  Once you feel comfortable running 2D using the default parameters, you will find it easy to adjust many parameters.

2D NMR handout

External links for chemical shifts and coupling constants

 

Spectral Database for Organic Compounds SDBS offers the spectral data and interpretations of a wide selection of organic molecules.

This University of Wisconsin website by Hans Reich offers a nicely tabulated collection of chemical shifts and J-couplings of many molecules.

SDS has a webpage for chemical shifts of solvents.

The paper by Hugo E. Gottlieb, Vadim Kotlyar, and Abraham Nudelman in J. Org. Chem., 1997, 62 (21), 7512-7515 has an extensive list of chemical shifts of common solvents as trace impurities in other solvents.

The paper by Gregory R. Fulmer et al. in Organometallics 2010, 29, 2176–2179 expanded the above work and has data for more solvents.